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500 Internal Errors
Did you uploaded in ASCII mode? Did you chmod 755 all you .cgi files (except for NT servers)? Are your config.cgi file correct?

Clicks are being recorded in clicks.txt but are not visible in admin
CLicks.txt records all clicks (valid or not) performed on click.cgi link. This helps you to track cheaters. But, a click is only validated if performed from within a web page on a server, i.e., that has a referring URL.

“I can’t open /[path]/xxx.dat at /[path]/ signup.cgi…”
This means that $regdir is not correct in config.cgi. $regdir is a path ad not an URL. It must be defined from the root of your server.
ex: /home/mysite/affiliate_logs